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  5. LOC_Os02g54624

LOC_Os02g54624


Description : zinc finger family protein, putative, expressed


Gene families : OG_42_0000431 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000431_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g54624
Cluster HCCA clusters: cluster_0060

Target Alias Description ECC score Gene Family Method Actions
Brara.B01759.1 No alias E3 ubiquitin ligase *(RIE1) 0.02 Orthogroups_2024-Update
Brara.F03459.1 No alias E3 ubiquitin ligase *(RIE1) 0.02 Orthogroups_2024-Update
Glyma.04G071800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os04g48050 No alias RING zinc finger protein, putative, expressed 0.03 Orthogroups_2024-Update
Potri.010G106300 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.03 Orthogroups_2024-Update
Potri.014G075000 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Pp1s399_20V6 No alias cleavage and polyadenylation specificity 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 334 375
No external refs found!