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  5. LOC_Os02g55480

LOC_Os02g55480


Description : zinc finger, C3HC4 type domain containing protein, expressed


Gene families : OG_42_0003523 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g55480
Cluster HCCA clusters: cluster_0129

Target Alias Description ECC score Gene Family Method Actions
Bradi1g47580 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.C04122.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G170413 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G201800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
MA_10274793g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_227599g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00001235-RA No alias (at2g15580 : 100.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Seita.4G051900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G332100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G063200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc07g007160 No alias RING/U-box superfamily protein (AHRD V3.3 *** A0A061GN77_THECC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 151 193
No external refs found!