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  5. LOC_Os02g57540

LOC_Os02g57540


Description : 60S ribosomal protein L28-1, putative, expressed


Gene families : OG_42_0002199 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002199_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os02g57540
Cluster HCCA clusters: cluster_0072

Target Alias Description ECC score Gene Family Method Actions
Brara.I01133.1 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Brara.K00891.1 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Cre11.g467578 No alias Ribosomal L28e protein family 0.02 Orthogroups_2024-Update
Glyma.13G352100 No alias Ribosomal L28e protein family 0.04 Orthogroups_2024-Update
Glyma.15G022700 No alias Ribosomal L28e protein family 0.03 Orthogroups_2024-Update
Kfl00166_0150 kfl00166_0150_v1.1 (at4g29410 : 108.0) Ribosomal L28e protein family;... 0.02 Orthogroups_2024-Update
Mp1g26940.1 No alias component RPL28 of LSU proteome component 0.05 Orthogroups_2024-Update
Potri.001G194000 No alias Ribosomal L28e protein family 0.02 Orthogroups_2024-Update
Seita.5G288600.1 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.009G215200.2 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Solyc03g121330 No alias 60S ribosomal protein L28, putative (AHRD V3.3 *** B9RKC5_RICCO) 0.03 Orthogroups_2024-Update
Sopen03g040140 No alias Ribosomal L28e protein family 0.04 Orthogroups_2024-Update
evm.model.contig_471.3 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
evm.model.tig00020710.93 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0008146 sulfotransferase activity IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR029004 L28e/Mak16 8 129
No external refs found!