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  5. Solyc07g044870

Solyc07g044870


Description : Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G07820.1)


Gene families : OG_42_0000512 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000512_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g044870
Cluster HCCA clusters: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
A4A49_25931 No alias polygalacturonase 0.03 Orthogroups_2024-Update
Glyma.02G016300 No alias polygalacturonase 4 0.02 Orthogroups_2024-Update
Solyc07g056290 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G78400.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 48 374
No external refs found!