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  5. Solyc01g080720

Solyc01g080720


Description : Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** A0A061ENU5_THECC)


Gene families : OG_42_0009375 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009375_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g080720
Cluster HCCA clusters: Cluster_96


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0000175 3'-5'-exoribonuclease activity IEP Predicted GO
CC GO:0000808 origin recognition complex IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004532 exoribonuclease activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005664 nuclear origin of replication recognition complex IEP Predicted GO
CC GO:0005801 cis-Golgi network IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016229 steroid dehydrogenase activity IEP Predicted GO
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 459 507
IPR002885 Pentatricopeptide_repeat 390 438
IPR002885 Pentatricopeptide_repeat 809 856
IPR002885 Pentatricopeptide_repeat 564 613
IPR002885 Pentatricopeptide_repeat 739 788
IPR002885 Pentatricopeptide_repeat 635 683
IPR002885 Pentatricopeptide_repeat 286 334
IPR002885 Pentatricopeptide_repeat 700 731
IPR002885 Pentatricopeptide_repeat 247 279
IPR002885 Pentatricopeptide_repeat 533 561
IPR002885 Pentatricopeptide_repeat 149 177
IPR002885 Pentatricopeptide_repeat 359 382
No external refs found!