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  5. LOC_Os03g02970

LOC_Os03g02970


Description : Dicer, putative, expressed


Gene families : OG_42_0000292 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000292_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g02970
Cluster HCCA clusters: cluster_0130

Target Alias Description ECC score Gene Family Method Actions
444049 No alias dicer-like 1 0.02 Orthogroups_2024-Update
At3g03300 No alias Endoribonuclease Dicer homolog 2... 0.03 Orthogroups_2024-Update
Glyma.04G057400 No alias dicer-like 3 0.02 Orthogroups_2024-Update
Kfl00265_0060 kfl00265_0060_v1.1 (at1g01040 : 525.0) Encodes a Dicer homolog. Dicer is a... 0.01 Orthogroups_2024-Update
PSME_00003728-RA No alias (at1g01040 : 178.0) Encodes a Dicer homolog. Dicer is a... 0.04 Orthogroups_2024-Update
PSME_00034426-RA No alias (at1g01040 : 454.0) Encodes a Dicer homolog. Dicer is a... 0.02 Orthogroups_2024-Update
Seita.7G162200.1 No alias endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 Orthogroups_2024-Update
Sobic.009G096100.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006396 RNA processing IEA InterProScan predictions
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000999 RNase_III_dom 1353 1498
IPR000999 RNase_III_dom 1573 1686
IPR003100 PAZ_dom 1170 1316
IPR001650 Helicase_C 627 742
IPR005034 Dicer_dimerisation_dom 817 905
No external refs found!