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  5. LOC_Os03g04890

LOC_Os03g04890


Description : zinc finger family protein, putative, expressed


Gene families : OG_42_0000384 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000384_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g04890
Cluster HCCA clusters: cluster_0091

Target Alias Description ECC score Gene Family Method Actions
Glyma.12G077333 No alias Zinc finger (C3HC4-type RING finger) family protein 0.02 Orthogroups_2024-Update
LOC_Os10g32750 No alias zinc finger family protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g32760 No alias zinc finger family protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00051131-RA No alias (at5g60710 : 155.0) Zinc finger (C3HC4-type RING finger)... 0.02 Orthogroups_2024-Update
Seita.9G230200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G544400.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032838 Vwaint_dom 590 661
IPR002035 VWF_A 247 425
IPR001841 Znf_RING 75 103
No external refs found!