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  5. LOC_Os03g08080

LOC_Os03g08080


Description : YGGT family protein, putative, expressed


Gene families : OG_42_0006059 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g08080
Cluster HCCA clusters: cluster_0086

Target Alias Description ECC score Gene Family Method Actions
Brara.J01506.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Cre12.g557050 No alias YGGT family protein 0.01 Orthogroups_2024-Update
PSME_00052323-RA No alias (at5g21920 : 172.0) YLMG2; FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
Potri.006G220400 No alias YGGT family protein 0.02 Orthogroups_2024-Update
Pp1s55_116V6 No alias Hypothetical 10.4 kDa protein ycf19 [Guillardia theta] 0.01 Orthogroups_2024-Update
Seita.9G519800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G484300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc08g061630 No alias YGGT family protein (AHRD V3.3 *** B9HD03_POPTR) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR003425 CCB3/YggT 122 187
No external refs found!