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  5. LOC_Os03g08680

LOC_Os03g08680


Description : pentatricopeptide, putative, expressed


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g08680
Cluster HCCA clusters: cluster_0091

Target Alias Description ECC score Gene Family Method Actions
At1g03540 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.02 Orthogroups_2024-Update
At2g33760 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.02 Orthogroups_2024-Update
At3g15930 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
At4g14170 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.02 Orthogroups_2024-Update
Bradi2g62740 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Brara.E01323.1 No alias RNA editing factor *(OTP81) 0.03 Orthogroups_2024-Update
LOC_Os01g19380 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g20420 No alias tetratricopeptide-like helical, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00044871-RA No alias (at2g39620 : 426.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Potri.014G097000 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Seita.2G091900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g095690 No alias Pentatricopeptide repeat-containing protein, putative... 0.02 Orthogroups_2024-Update
Solyc02g081900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc08g076150 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 193 239
IPR002885 Pentatricopeptide_repeat 291 340
IPR002885 Pentatricopeptide_repeat 95 117
IPR002885 Pentatricopeptide_repeat 169 192
No external refs found!