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LOC_Os03g09150


Description : pumilio-family RNA binding repeat domain containing protein, expressed


Gene families : OG_42_0001160 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001160_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g09150
Cluster HCCA clusters: cluster_0013

Target Alias Description ECC score Gene Family Method Actions
A4A49_25869 No alias pumilio-like 12 0.03 Orthogroups_2024-Update
At1g35750 No alias Putative pumilio homolog 10... 0.02 Orthogroups_2024-Update
Glyma.04G102900 No alias pumilio 7 0.02 Orthogroups_2024-Update
HORVU4Hr1G078710.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os12g31000 No alias pumilio-family RNA binding repeat domain containing... 0.04 Orthogroups_2024-Update
Mp1g09040.1 No alias Pumilio homolog 12 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Potri.001G298000 No alias pumilio 12 0.02 Orthogroups_2024-Update
Potri.002G095400 No alias pumilio 7 0.03 Orthogroups_2024-Update
Pp1s14_277V6 No alias MCD7.1; pumilio-family RNA-binding protein, putative... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0051382 kinetochore assembly IEP Predicted GO
BP GO:0051383 kinetochore organization IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 541 573
IPR001313 Pumilio_RNA-bd_rpt 427 460
IPR001313 Pumilio_RNA-bd_rpt 611 636
IPR001313 Pumilio_RNA-bd_rpt 581 598
IPR001313 Pumilio_RNA-bd_rpt 474 500
IPR001313 Pumilio_RNA-bd_rpt 504 536
IPR001313 Pumilio_RNA-bd_rpt 393 424
No external refs found!