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  5. Solyc07g047820

Solyc07g047820


Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A124SF42_CYNCS)


Gene families : OG_42_0001457 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001457_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g047820
Cluster HCCA clusters: Cluster_250

Target Alias Description ECC score Gene Family Method Actions
At1g77340 No alias Pentatricopeptide repeat (PPR) superfamily protein... 0.04 Orthogroups_2024-Update
HORVU7Hr1G099910.4 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.008G040000.1 No alias Unknown function 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 409 438
IPR002885 Pentatricopeptide_repeat 958 987
IPR002885 Pentatricopeptide_repeat 923 950
IPR002885 Pentatricopeptide_repeat 507 538
IPR002885 Pentatricopeptide_repeat 297 323
IPR002885 Pentatricopeptide_repeat 441 489
IPR002885 Pentatricopeptide_repeat 685 733
IPR002885 Pentatricopeptide_repeat 615 664
IPR002885 Pentatricopeptide_repeat 335 384
IPR002885 Pentatricopeptide_repeat 849 898
IPR002885 Pentatricopeptide_repeat 755 802
IPR002885 Pentatricopeptide_repeat 545 594
No external refs found!