1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g047900

Solyc07g047900


Description : CRS1/YhbY (CRM) domain protein (AHRD V3.3 *** A0A072U6I9_MEDTR)


Gene families : OG_42_0001255 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001255_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g047900
Cluster HCCA clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
Bradi1g42940 No alias RNA-binding CRS1 / YhbY (CRM) domain protein 0.02 Orthogroups_2024-Update
Seita.4G132500.1 No alias splicing factor *(CFM6/7) 0.02 Orthogroups_2024-Update
Sopen12g006070 No alias CRS1 / YhbY (CRM) domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
BP GO:0000226 microtubule cytoskeleton organization IEP Predicted GO
CC GO:0000347 THO complex IEP Predicted GO
CC GO:0000445 THO complex part of transcription export complex IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007051 spindle organization IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051225 spindle assembly IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
CC GO:0070652 HAUS complex IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 141 225
No external refs found!