Description : pentatricopeptide, putative, expressed
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Oryza release: LOC_Os03g13230 | |
Cluster | HCCA clusters: cluster_0059 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
171135 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
412514 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
73641 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
74842 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
94907 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi2g22840 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi3g05000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi4g15307 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi4g30190 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.02 | Orthogroups_2024-Update | |
Glyma.04G203500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
HORVU3Hr1G058070.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU4Hr1G067540.5 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU4Hr1G080660.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
LOC_Os04g43430 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
PSME_00010400-RA | No alias | (at4g02750 : 490.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
PSME_00021863-RA | No alias | (at2g22070 : 612.0) pentatricopeptide (PPR)... | 0.02 | Orthogroups_2024-Update | |
PSME_00024152-RA | No alias | (at2g13600 : 434.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00025245-RA | No alias | (at3g03580 : 656.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
Potri.001G066100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Seita.1G334200.1 | No alias | RNA editing factor *(CLB19) | 0.02 | Orthogroups_2024-Update | |
Sobic.003G277100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.005G210700.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Solyc02g070710 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
Solyc03g116840 | No alias | BED zinc finger,hAT family dimerization domain (AHRD... | 0.02 | Orthogroups_2024-Update | |
Solyc07g009220 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
Sopen01g032600 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen03g016890 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004332 | fructose-bisphosphate aldolase activity | IEP | Predicted GO |
MF | GO:0004525 | ribonuclease III activity | IEP | Predicted GO |
MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Predicted GO |
BP | GO:0005975 | carbohydrate metabolic process | IEP | Predicted GO |
BP | GO:0006066 | alcohol metabolic process | IEP | Predicted GO |
BP | GO:0006729 | tetrahydrobiopterin biosynthetic process | IEP | Predicted GO |
BP | GO:0006732 | coenzyme metabolic process | IEP | Predicted GO |
BP | GO:0006814 | sodium ion transport | IEP | Predicted GO |
MF | GO:0008124 | 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | IEP | Predicted GO |
BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0009108 | coenzyme biosynthetic process | IEP | Predicted GO |
MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Predicted GO |
MF | GO:0016829 | lyase activity | IEP | Predicted GO |
MF | GO:0016832 | aldehyde-lyase activity | IEP | Predicted GO |
MF | GO:0016836 | hydro-lyase activity | IEP | Predicted GO |
BP | GO:0017144 | drug metabolic process | IEP | Predicted GO |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predicted GO |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
BP | GO:0019751 | polyol metabolic process | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | Predicted GO |
BP | GO:0034311 | diol metabolic process | IEP | Predicted GO |
BP | GO:0034312 | diol biosynthetic process | IEP | Predicted GO |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
BP | GO:0042558 | pteridine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0042559 | pteridine-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
BP | GO:0044283 | small molecule biosynthetic process | IEP | Predicted GO |
BP | GO:0046146 | tetrahydrobiopterin metabolic process | IEP | Predicted GO |
BP | GO:0046165 | alcohol biosynthetic process | IEP | Predicted GO |
BP | GO:0046173 | polyol biosynthetic process | IEP | Predicted GO |
BP | GO:0051186 | cofactor metabolic process | IEP | Predicted GO |
BP | GO:0051188 | cofactor biosynthetic process | IEP | Predicted GO |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | Predicted GO |
BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 509 | 631 |
IPR002885 | Pentatricopeptide_repeat | 232 | 280 |
IPR002885 | Pentatricopeptide_repeat | 333 | 381 |
IPR002885 | Pentatricopeptide_repeat | 308 | 330 |
IPR002885 | Pentatricopeptide_repeat | 474 | 503 |
IPR002885 | Pentatricopeptide_repeat | 203 | 229 |
IPR002885 | Pentatricopeptide_repeat | 409 | 432 |
IPR002885 | Pentatricopeptide_repeat | 128 | 155 |
No external refs found! |