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  5. Solyc01g080840

Solyc01g080840


Description : Protein translocase subunit SecA (AHRD V3.3 *** K4AXX7_SOLLC)


Gene families : OG_42_0001932 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001932_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g080840
Cluster HCCA clusters: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
Cre12.g517900 No alias Albino or Glassy Yellow 1 0.01 Orthogroups_2024-Update
Kfl00048_0450 kfl00048_0450_v1.1 (at4g01800 : 1272.0) Encodes the ATPase subunit of the... 0.02 Orthogroups_2024-Update
MA_9251669g0020 No alias (q41062|seca_pea : 165.0) Preprotein translocase secA... 0.03 Orthogroups_2024-Update
Mp5g09750.1 No alias component SecA1 of thylakoid membrane Sec1 translocation system 0.03 Orthogroups_2024-Update
Potri.014G112266 No alias Albino or Glassy Yellow 1 0.03 Orthogroups_2024-Update
Pp1s9_141V6 No alias preprotein subunit 0.02 Orthogroups_2024-Update
Seita.5G153800.1 No alias component *(SecA1) of thylakoid membrane Sec1... 0.03 Orthogroups_2024-Update
Sobic.003G150800.1 No alias component *(SecA1) of thylakoid membrane Sec1... 0.04 Orthogroups_2024-Update
Sopen01g030640 No alias SecA Wing and Scaffold domain 0.13 Orthogroups_2024-Update
evm.model.tig00000219.51 No alias (at4g01800 : 515.0) Encodes the ATPase subunit of the... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0017038 protein import IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003856 3-dehydroquinate synthase activity IEP Predicted GO
MF GO:0004133 glycogen debranching enzyme activity IEP Predicted GO
MF GO:0004134 4-alpha-glucanotransferase activity IEP Predicted GO
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
CC GO:0005779 integral component of peroxisomal membrane IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006788 heme oxidation IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
BP GO:0009439 cyanate metabolic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predicted GO
CC GO:0031300 intrinsic component of organelle membrane IEP Predicted GO
CC GO:0031301 integral component of organelle membrane IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
MF GO:0046422 violaxanthin de-epoxidase activity IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011115 SecA_DEAD 87 454
IPR011130 SecA_preprotein_X-link_dom 304 410
IPR011116 SecA_Wing/Scaffold 760 974
No external refs found!