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  5. LOC_Os03g16824

LOC_Os03g16824


Description : spotted leaf 11, putative, expressed


Gene families : OG_42_0000634 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000634_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g16824
Cluster HCCA clusters: cluster_0138

Target Alias Description ECC score Gene Family Method Actions
Brara.A02419.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU6Hr1G073280.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Potri.008G035700 No alias plant U-box 14 0.03 Orthogroups_2024-Update
Pp1s156_145V6 No alias F12A12.30; armadillo/beta-catenin repeat family protein... 0.03 Orthogroups_2024-Update
Pp1s9_333V6 No alias F12A12.30; armadillo/beta-catenin repeat family protein... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0016567 protein ubiquitination IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000225 Armadillo 502 540
IPR000225 Armadillo 419 458
IPR003613 Ubox_domain 294 364
No external refs found!