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  5. LOC_Os03g23950

LOC_Os03g23950


Description : adapitin protein, putative, expressed


Gene families : OG_42_0001931 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001931_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g23950
Cluster HCCA clusters: cluster_0064

Target Alias Description ECC score Gene Family Method Actions
269763 No alias adaptin family protein 0.02 Orthogroups_2024-Update
Bradi2g44070 No alias adaptin family protein 0.03 Orthogroups_2024-Update
Cre11.g478156 No alias Adaptin family protein 0.02 Orthogroups_2024-Update
Glyma.01G227000 No alias Adaptin family protein 0.03 Orthogroups_2024-Update
Glyma.12G021600 No alias Adaptin family protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G055990.1 No alias large subunit beta of AP-4 vacuole cargo adaptor complex 0.02 Orthogroups_2024-Update
Pp1s281_58V6 No alias beta-adaptin-like protein 0.02 Orthogroups_2024-Update
Pp1s338_11V6 No alias ap-2 complex subunit beta- 0.02 Orthogroups_2024-Update
evm.model.tig00020592.38 No alias (at4g11380 : 730.0) Adaptin family protein; FUNCTIONS... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
CC GO:0030117 membrane coat IEA InterProScan predictions
CC GO:0030131 clathrin adaptor complex IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
BP GO:0000226 microtubule cytoskeleton organization IEP Predicted GO
CC GO:0000776 kinetochore IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007051 spindle organization IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0034508 centromere complex assembly IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0051225 spindle assembly IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
CC GO:0070652 HAUS complex IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR015151 B-adaptin_app_sub_C 787 895
IPR002553 Clathrin/coatomer_adapt-like_N 15 533
IPR008152 Clathrin_a/b/g-adaptin_app_Ig 680 775
No external refs found!