1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g24020

LOC_Os03g24020


Description : ribosomal protein L6, putative, expressed


Gene families : OG_42_0002024 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002024_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g24020
Cluster HCCA clusters: cluster_0048

Target Alias Description ECC score Gene Family Method Actions
A4A49_09051 No alias 50s ribosomal protein l6, chloroplastic 0.06 Orthogroups_2024-Update
Bradi1g62170 No alias Ribosomal protein L6 family 0.04 Orthogroups_2024-Update
Cre09.g415950 No alias Ribosomal protein L6 family 0.04 Orthogroups_2024-Update
GRMZM2G170870 No alias Ribosomal protein L6 family 0.02 Orthogroups_2024-Update
HORVU4Hr1G040950.3 No alias component *(uL6c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Kfl00137_0220 kfl00137_0220_v1.1 (at1g05190 : 221.0) embryo defective 2394 (emb2394);... 0.03 Orthogroups_2024-Update
Kfl00137_0230 kfl00137_0230_v1.1 (at1g05190 : 122.0) embryo defective 2394 (emb2394);... 0.02 Orthogroups_2024-Update
Potri.014G153000 No alias Ribosomal protein L6 family 0.06 Orthogroups_2024-Update
Pp1s138_83V6 No alias 50s ribosomal protein l6 0.04 Orthogroups_2024-Update
Pp1s431_3V6 No alias 50s ribosomal protein l6 0.04 Orthogroups_2024-Update
Seita.9G400600.1 No alias component *(uL6c) of large plastid ribosomal-subunit proteome 0.05 Orthogroups_2024-Update
Sobic.001G368500.1 No alias component *(uL6c) of large plastid ribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Sopen12g034790 No alias Ribosomal protein L6 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
MF GO:0019843 rRNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006814 sodium ion transport IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 136 210
IPR020040 Ribosomal_L6_a/b-dom 56 128
No external refs found!