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  5. LOC_Os03g25770

LOC_Os03g25770


Description : RNA recognition motif containing protein, putative, expressed


Gene families : OG_42_0000852 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000852_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Oryza release: LOC_Os03g25770
Cluster HCCA clusters: cluster_0050

Target Alias Description ECC score Gene Family Method Actions
Brara.F00039.1 No alias RNA splicing factor *(SCL28/30/33) 0.03 Orthogroups_2024-Update
Mp4g01880.1 No alias SCL28/30/33 RNA splicing factor 0.02 Orthogroups_2024-Update
Potri.001G006400 No alias SC35-like splicing factor 30A 0.02 Orthogroups_2024-Update
Seita.3G326000.1 No alias RNA splicing factor *(SCL28/30/33) 0.03 Orthogroups_2024-Update
Solyc01g080660 No alias RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
BP GO:0006353 DNA-templated transcription, termination IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
CC GO:0031082 BLOC complex IEP Predicted GO
CC GO:0031083 BLOC-1 complex IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044445 cytosolic part IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 39 108
No external refs found!