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  5. LOC_Os03g29460

LOC_Os03g29460


Description : 60S ribosomal protein, putative, expressed


Gene families : OG_42_0002371 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002371_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g29460
Cluster HCCA clusters: cluster_0084

Target Alias Description ECC score Gene Family Method Actions
165371 No alias Ribosomal protein L18e/L15 superfamily protein 0.03 Orthogroups_2024-Update
A4A49_03476 No alias 60s ribosomal protein l27a-3 0.04 Orthogroups_2024-Update
Brara.B01921.1 No alias component *(uL15) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.G00984.1 No alias component *(uL15) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.G02437.1 No alias component *(uL15) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.I03248.1 No alias component *(uL15) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Cre02.g115200 No alias Ribosomal protein L18e/L15 superfamily protein 0.05 Orthogroups_2024-Update
Glyma.01G026100 No alias Ribosomal protein L18e/L15 superfamily protein 0.05 Orthogroups_2024-Update
Glyma.04G187500 No alias Ribosomal protein L18e/L15 superfamily protein 0.04 Orthogroups_2024-Update
Glyma.05G040900 No alias Ribosomal protein L18e/L15 superfamily protein 0.02 Orthogroups_2024-Update
Glyma.17G085400 No alias Ribosomal protein L18e/L15 superfamily protein 0.08 Orthogroups_2024-Update
MA_10436259g0020 No alias (at1g70600 : 268.0) Ribosomal protein L18e/L15... 0.03 Orthogroups_2024-Update
Mp5g00120.1 No alias component RPL27a of LSU proteome component 0.03 Orthogroups_2024-Update
Potri.016G069000 No alias Ribosomal protein L18e/L15 superfamily protein 0.02 Orthogroups_2024-Update
Pp1s400_20V6 No alias 60s ribosomal protein 0.07 Orthogroups_2024-Update
Pp1s4_178V6 No alias F24J13.17; 60S ribosomal protein L27A (RPL27aC)... 0.02 Orthogroups_2024-Update
Pp1s77_266V6 No alias 60s ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s8_10V6 No alias 60s ribosomal protein 0.06 Orthogroups_2024-Update
Seita.1G073500.1 No alias component *(uL15) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Seita.2G387500.1 No alias component *(uL15) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Sobic.002G372400.1 No alias component *(uL15) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Solyc03g112360 No alias 60S ribosomal protein L27A (AHRD V3.3 *** B6VC54_VERFO) 0.08 Orthogroups_2024-Update
Sopen03g031460 No alias Ribosomal protein L18e/L15 0.07 Orthogroups_2024-Update
evm.model.contig_4432.8 No alias (at1g70600 : 218.0) Ribosomal protein L18e/L15... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004061 arylformamidase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006569 tryptophan catabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009063 cellular amino acid catabolic process IEP Predicted GO
BP GO:0009074 aromatic amino acid family catabolic process IEP Predicted GO
BP GO:0009310 amine catabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
BP GO:0019441 tryptophan catabolic process to kynurenine IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042180 cellular ketone metabolic process IEP Predicted GO
BP GO:0042402 cellular biogenic amine catabolic process IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
BP GO:0042436 indole-containing compound catabolic process IEP Predicted GO
BP GO:0042537 benzene-containing compound metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046218 indolalkylamine catabolic process IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0070189 kynurenine metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901606 alpha-amino acid catabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR021131 Ribosomal_L18e/L15P 28 143
No external refs found!