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  5. Solyc07g052580

Solyc07g052580


Description : LOW QUALITY:F-box protein, putative (AHRD V3.3 *** Q6L3P8_SOLDE)


Gene families : OG_42_0000102 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g052580
Cluster HCCA clusters: Cluster_269

Target Alias Description ECC score Gene Family Method Actions
A4A49_19932 No alias f-boxkelch-repeat protein 0.03 Orthogroups_2024-Update
Glyma.01G232700 No alias F-box family protein 0.02 Orthogroups_2024-Update
Glyma.05G166200 No alias F-box and associated interaction domains-containing protein 0.03 Orthogroups_2024-Update
Glyma.06G197100 No alias F-box family protein 0.02 Orthogroups_2024-Update
Potri.001G318300 No alias F-box family protein 0.02 Orthogroups_2024-Update
Potri.010G207500 No alias F-box and associated interaction domains-containing protein 0.02 Orthogroups_2024-Update
Solyc11g008300 No alias LOW QUALITY:F-box family protein, putative (AHRD V3.3... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 64 103
IPR006527 F-box-assoc_dom_typ1 266 364
No external refs found!