1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g053030

Solyc07g053030


Description : GH3 family protein (AHRD V3.3 *** A0A0K9NRD8_ZOSMR)


Gene families : OG_42_0000128 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g053030
Cluster HCCA clusters: Cluster_289

Target Alias Description ECC score Gene Family Method Actions
99818 No alias Auxin-responsive GH3 family protein 0.03 Orthogroups_2024-Update
A4A49_07196 No alias jasmonic acid-amido synthetase jar1 0.04 Orthogroups_2024-Update
Bradi2g07227 No alias Auxin-responsive GH3 family protein 0.02 Orthogroups_2024-Update
Glyma.12G141000 No alias Auxin-responsive GH3 family protein 0.03 Orthogroups_2024-Update
Sopen07g028470 No alias GH3 auxin-responsive promoter 0.03 Orthogroups_2024-Update
Sopen10g005420 No alias GH3 auxin-responsive promoter 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Predicted GO
CC GO:0005666 RNA polymerase III complex IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006383 transcription by RNA polymerase III IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004993 GH3 23 572
No external refs found!