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  5. LOC_Os03g39940

LOC_Os03g39940


Description : retrotransposon protein, putative, Ty3-gypsy subclass, expressed


Gene families : OG_42_0000478 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000478_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g39940
Cluster HCCA clusters: cluster_0030

Target Alias Description ECC score Gene Family Method Actions
Bradi2g43797 No alias XH/XS domain-containing protein 0.03 Orthogroups_2024-Update
Brara.G03701.1 No alias Unknown function 0.01 Orthogroups_2024-Update
HORVU1Hr1G022000.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0031047 gene silencing by RNA IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0005381 iron ion transmembrane transporter activity IEP Predicted GO
BP GO:0006826 iron ion transport IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034755 iron ion transmembrane transport IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
InterPro domains Description Start Stop
IPR010685 DUF1263 416 467
IPR005380 XS_domain 112 221
IPR005381 Znf-XS_domain 43 84
No external refs found!