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  5. Solyc07g053380

Solyc07g053380


Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XH40_CYNCS)


Gene families : OG_42_0010358 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010358_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g053380
Cluster HCCA clusters: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
At3g58590 No alias Pentatricopeptide repeat-containing protein At3g58590... 0.03 Orthogroups_2024-Update
Glyma.06G284200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.5G322100.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sopen07g027350 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
MF GO:0004549 tRNA-specific ribonuclease activity IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 649 700
IPR002885 Pentatricopeptide_repeat 293 340
IPR002885 Pentatricopeptide_repeat 522 570
IPR002885 Pentatricopeptide_repeat 93 136
IPR002885 Pentatricopeptide_repeat 167 193
IPR002885 Pentatricopeptide_repeat 597 626
IPR002885 Pentatricopeptide_repeat 268 289
IPR002885 Pentatricopeptide_repeat 195 224
No external refs found!