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  5. Solyc07g053480

Solyc07g053480


Description : Rab family GTPase (AHRD V3.3 *** D8RE14_SELML)


Gene families : OG_42_0000131 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000131_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g053480
Cluster HCCA clusters: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
At1g09630 No alias Ras-related protein RABA2a... 0.03 Orthogroups_2024-Update
Brara.F03038.1 No alias A-class RAB GTPase 0.06 Orthogroups_2024-Update
Brara.J02319.1 No alias A-class RAB GTPase 0.06 Orthogroups_2024-Update
GRMZM2G144008 No alias RAB GTPase homolog A2B 0.04 Orthogroups_2024-Update
Glyma.07G202900 No alias RAB GTPase homolog A1F 0.04 Orthogroups_2024-Update
HORVU1Hr1G033390.3 No alias A-class RAB GTPase 0.04 Orthogroups_2024-Update
HORVU5Hr1G053370.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Potri.019G092500 No alias RAB GTPase homolog A1F 0.03 Orthogroups_2024-Update
Sobic.002G153500.1 No alias A-class RAB GTPase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA InterProScan predictions
BP GO:0007264 small GTPase mediated signal transduction IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003689 DNA clamp loader activity IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005663 DNA replication factor C complex IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0033170 protein-DNA loading ATPase activity IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0043138 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0043140 ATP-dependent 3'-5' DNA helicase activity IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001806 Small_GTPase 15 175
No external refs found!