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  5. LOC_Os03g42290

LOC_Os03g42290


Description : B3 DNA binding domain containing protein, expressed


Gene families : OG_42_0000707 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000707_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g42290
Cluster HCCA clusters: cluster_0062

Target Alias Description ECC score Gene Family Method Actions
At4g33280 No alias AP2/B3-like transcriptional factor family protein... 0.03 Orthogroups_2024-Update
Bradi4g37946 No alias AP2/B3-like transcriptional factor family protein 0.02 Orthogroups_2024-Update
Brara.K00661.1 No alias REM-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.17G246000 No alias AP2/B3-like transcriptional factor family protein 0.05 Orthogroups_2024-Update
HORVU4Hr1G013910.21 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G023520.10 No alias Unknown function 0.03 Orthogroups_2024-Update
Pp1s27_190V6 No alias Vitellogenin-2 precursor (Vitellogenin II) (Major... 0.02 Orthogroups_2024-Update
Seita.3G372700.1 No alias REM-type transcription factor 0.02 Orthogroups_2024-Update
Seita.7G295000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G166400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G166800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G167000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G166100.4 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0007088 regulation of mitotic nuclear division IEP Predicted GO
BP GO:0007346 regulation of mitotic cell cycle IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008378 galactosyltransferase activity IEP Predicted GO
BP GO:0010564 regulation of cell cycle process IEP Predicted GO
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
BP GO:0033043 regulation of organelle organization IEP Predicted GO
BP GO:0033044 regulation of chromosome organization IEP Predicted GO
BP GO:0033045 regulation of sister chromatid segregation IEP Predicted GO
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0051128 regulation of cellular component organization IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0051783 regulation of nuclear division IEP Predicted GO
BP GO:0051983 regulation of chromosome segregation IEP Predicted GO
BP GO:1901987 regulation of cell cycle phase transition IEP Predicted GO
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Predicted GO
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Predicted GO
BP GO:1905818 regulation of chromosome separation IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 249 345
IPR003340 B3_DNA-bd 35 134
No external refs found!