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  5. LOC_Os03g43420

LOC_Os03g43420


Description : single-stranded DNA-binding protein, putative, expressed


Gene families : OG_42_0002038 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002038_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g43420
Cluster HCCA clusters: cluster_0043

Target Alias Description ECC score Gene Family Method Actions
At1g31010 No alias Protein OSB4, chloroplastic... 0.02 Orthogroups_2024-Update
At5g44785 No alias Organellar single-stranded DNA binding protein 3... 0.02 Orthogroups_2024-Update
Bradi1g14220 No alias Primosome PriB/single-strand DNA-binding 0.04 Orthogroups_2024-Update
GRMZM2G128432 No alias Primosome PriB/single-strand DNA-binding 0.04 Orthogroups_2024-Update
MA_10436156g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Potri.001G394200 No alias plastid transcriptionally active 9 0.02 Orthogroups_2024-Update
Seita.5G451200.1 No alias cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.04 Orthogroups_2024-Update
Seita.9G162700.1 No alias ssDNA-binding protein *(OSB) 0.04 Orthogroups_2024-Update
Sobic.001G161400.1 No alias ssDNA-binding protein *(OSB) 0.06 Orthogroups_2024-Update
Solyc09g065840 No alias single-stranded DNA binding protein-like protein 0.03 Orthogroups_2024-Update
Sopen09g002310 No alias Single-strand binding protein family 0.03 Orthogroups_2024-Update
Sopen09g027630 No alias Single-strand binding protein family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0005102 signaling receptor binding IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
InterPro domains Description Start Stop
IPR000424 Primosome_PriB/ssb 79 172
No external refs found!