1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g43810

LOC_Os03g43810


Description : helix-loop-helix DNA-binding domain containing protein, expressed


Gene families : OG_42_0000449 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000449_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g43810
Cluster HCCA clusters: cluster_0103

Target Alias Description ECC score Gene Family Method Actions
A4A49_38454 No alias transcription factor pif5 0.03 Orthogroups_2024-Update
At2g20180 No alias Transcription factor PIF1... 0.03 Orthogroups_2024-Update
At3g59060 No alias Transcription factor PIF5... 0.03 Orthogroups_2024-Update
Bradi1g13980 No alias phytochrome interacting factor 3-like 5 0.03 Orthogroups_2024-Update
Bradi2g36740 No alias phytochrome interacting factor 3 0.02 Orthogroups_2024-Update
Brara.C02178.1 No alias regulatory protein *(PIF) of red/far-red light... 0.02 Orthogroups_2024-Update
Brara.I04061.1 No alias regulatory protein *(PIF) of red/far-red light... 0.02 Orthogroups_2024-Update
GRMZM2G016756 No alias phytochrome interacting factor 4 0.05 Orthogroups_2024-Update
Glyma.02G282100 No alias phytochrome interacting factor 4 0.04 Orthogroups_2024-Update
Glyma.10G142600 No alias phytochrome interacting factor 3 0.02 Orthogroups_2024-Update
Glyma.14G032200 No alias phytochrome interacting factor 4 0.02 Orthogroups_2024-Update
HORVU1Hr1G017900.3 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
HORVU2Hr1G060680.1 No alias regulatory protein *(PIF) of red/far-red light... 0.03 Orthogroups_2024-Update
HORVU5Hr1G093310.11 No alias regulatory protein *(PIF) of red/far-red light... 0.02 Orthogroups_2024-Update
Pp1s147_126V6 No alias helix-loop-helix dna-binding domain containing expressed 0.02 Orthogroups_2024-Update
Pp1s69_37V6 No alias dna binding 0.02 Orthogroups_2024-Update
Seita.9G067200.1 No alias regulatory protein *(PIF) of red/far-red light... 0.02 Orthogroups_2024-Update
Sobic.001G068301.1 No alias bHLH-type transcription factor 0.05 Orthogroups_2024-Update
Sobic.001G158900.3 No alias regulatory protein *(PIF) of red/far-red light... 0.03 Orthogroups_2024-Update
Solyc02g093280 No alias LOW QUALITY:bHLH transcription factor 017 0.03 Orthogroups_2024-Update
Solyc07g043580 No alias bHLH transcription factor 052 0.02 Orthogroups_2024-Update
Sopen09g025180 No alias Helix-loop-helix DNA-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000814 ESCRT II complex IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005743 mitochondrial inner membrane IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
BP GO:0006848 pyruvate transport IEP Predicted GO
BP GO:0006850 mitochondrial pyruvate transmembrane transport IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015718 monocarboxylic acid transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
CC GO:0019866 organelle inner membrane IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0036452 ESCRT complex IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044440 endosomal part IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
MF GO:0051743 red chlorophyll catabolite reductase activity IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0071985 multivesicular body sorting pathway IEP Predicted GO
BP GO:0098656 anion transmembrane transport IEP Predicted GO
BP GO:1901475 pyruvate transmembrane transport IEP Predicted GO
BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
BP GO:1990542 mitochondrial transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 322 368
No external refs found!