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  5. LOC_Os03g45300

LOC_Os03g45300


Description : transposon protein, putative, unclassified, expressed


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g45300
Cluster HCCA clusters: cluster_0072

Target Alias Description ECC score Gene Family Method Actions
At4g19990 No alias FAR1-related sequence 1 [Source:UniProtKB/TrEMBL;Acc:F4JU19] 0.03 Orthogroups_2024-Update
Bradi2g25465 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
Brara.B03519.1 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
Brara.G02019.1 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.04G193200 No alias FAR1-related sequence 5 0.02 Orthogroups_2024-Update
Glyma.06G229800 No alias FAR1-related sequence 5 0.04 Orthogroups_2024-Update
Glyma.10G121700 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
Glyma.10G259000 No alias FRS (FAR1 Related Sequences) transcription factor family 0.02 Orthogroups_2024-Update
Glyma.20G084051 No alias FAR1-related sequence 7 0.02 Orthogroups_2024-Update
LOC_Os01g64210 No alias expressed protein 0.02 Orthogroups_2024-Update
LOC_Os01g71850 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g25100 No alias transposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g27390 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g14020 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Potri.016G059101 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
Potri.016G059200 No alias FAR1-related sequence 5 0.02 Orthogroups_2024-Update
Seita.2G152300.1 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.002G374300.2 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.009G147450.1 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update
Solyc03g121630 No alias Protein FAR1-RELATED SEQUENCE 4 (AHRD V3.3 *** W9QKD5_9ROSA) 0.02 Orthogroups_2024-Update
Solyc05g014910 No alias LOW QUALITY:Protein FAR1-RELATED SEQUENCE 5 (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc06g068210 No alias Protein FAR1-RELATED SEQUENCE 8 (AHRD V3.3 *** W9RSB0_9ROSA) 0.02 Orthogroups_2024-Update
Solyc08g060840 No alias FAR1 (AHRD V3.3 *** A0A178UYQ0_ARATH) 0.02 Orthogroups_2024-Update
Sopen01g054420 No alias FAR1 DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR018289 MULE_transposase_dom 303 392
IPR004330 FAR1_DNA_bnd_dom 82 184
IPR007527 Znf_SWIM 590 613
No external refs found!