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  5. Solyc07g053810

Solyc07g053810


Description : Squamosa promoter binding protein 4


Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g053810
Cluster HCCA clusters: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
At1g69170 No alias Squamosa promoter-binding-like protein 6... 0.02 Orthogroups_2024-Update
At5g43270 No alias Squamosa promoter-binding-like protein 2... 0.03 Orthogroups_2024-Update
Brara.I03021.1 No alias SBP-type transcription factor 0.02 Orthogroups_2024-Update
Cre07.g345050 No alias squamosa promoter binding protein-like 10 0.03 Orthogroups_2024-Update
GRMZM2G148467 No alias squamosa promoter binding protein-like 10 0.02 Orthogroups_2024-Update
GRMZM5G806833 No alias Function unknown 0.03 Orthogroups_2024-Update
GRMZM5G878561 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.01G063700 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.05G019000 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.02 Orthogroups_2024-Update
Glyma.17G080700 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
HORVU5Hr1G076380.9 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os04g46580 No alias OsSPL7 - SBP-box gene family member, expressed 0.03 Orthogroups_2024-Update
Mp1g10020.1 No alias transcription factor (SBP) 0.03 Orthogroups_2024-Update
PSME_00051919-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00053503-RA No alias (at1g02065 : 156.0) Encodes an SBP-box gene, a member of... 0.03 Orthogroups_2024-Update
Potri.018G149900 No alias squamosa promoter binding protein-like 2 0.03 Orthogroups_2024-Update
Potri.019G073600 No alias squamosa promoter binding protein-like 15 0.04 Orthogroups_2024-Update
Pp1s118_9V6 No alias sbp1 gene for squamosa promoter-binding protein SBP1 0.03 Orthogroups_2024-Update
Pp1s194_61V6 No alias squamosa promoter-binding 0.03 Orthogroups_2024-Update
Solyc05g015840 No alias Squamosa promoter binding protein 13 0.03 Orthogroups_2024-Update
Sopen10g004860 No alias SBP domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004333 SBP_dom 53 126
No external refs found!