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  5. LOC_Os03g46610

LOC_Os03g46610


Description : DEAD-box ATP-dependent RNA helicase, putative, expressed


Gene families : OG_42_0001960 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001960_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g46610
Cluster HCCA clusters: cluster_0075

Target Alias Description ECC score Gene Family Method Actions
At5g60990 No alias DEAD-box ATP-dependent RNA helicase 10... 0.03 Orthogroups_2024-Update
Bradi1g18930 No alias DEA(D/H)-box RNA helicase family protein 0.05 Orthogroups_2024-Update
Bradi1g20340 No alias RNA helicase 36 0.03 Orthogroups_2024-Update
Cre12.g505200 No alias DEA(D/H)-box RNA helicase family protein 0.01 Orthogroups_2024-Update
Mp1g19410.1 No alias SSU processome assembly factor (SWA3) 0.02 Orthogroups_2024-Update
Potri.007G068800 No alias DEA(D/H)-box RNA helicase family protein 0.04 Orthogroups_2024-Update
Potri.008G084700 No alias RNA helicase 36 0.02 Orthogroups_2024-Update
Pp1s28_25V6 No alias dead (asp-glu-ala-asp) box polypeptide 47 0.02 Orthogroups_2024-Update
Seita.2G403000.1 No alias SSU processome assembly factor *(SWA3) 0.03 Orthogroups_2024-Update
Sobic.002G387500.1 No alias SSU processome assembly factor *(SWA3) 0.03 Orthogroups_2024-Update
Solyc10g007550 No alias RNA helicase DEAD31 0.02 Orthogroups_2024-Update
evm.model.tig00020848.20 No alias (at5g60990 : 445.0) DEA(D/H)-box RNA helicase family... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004819 glutamine-tRNA ligase activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015672 monovalent inorganic cation transport IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
BP GO:0098655 cation transmembrane transport IEP Predicted GO
BP GO:0098660 inorganic ion transmembrane transport IEP Predicted GO
BP GO:0098662 inorganic cation transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 65 234
IPR001650 Helicase_C 274 377
No external refs found!