LOC_Os03g47016

Description : homeobox protein knotted-1-like 10, putative, expressed

Gene families : OG_42_0000234 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000234_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os03g47016
Cluster	HCCA clusters: cluster_0062

Target	Alias	Description	ECC score	Gene Family Method
A4A49_11478	No alias	homeobox protein knotted-1-like 6	0.02	Orthogroups_2024-Update
Brara.B01915.1	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
Brara.H02211.1	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I01459.1	No alias	KNOX-type transcription factor	0.04	Orthogroups_2024-Update
Glyma.10G147000	No alias	KNOTTED1-like homeobox gene 6	0.02	Orthogroups_2024-Update
MA_9556g0010	No alias	(o04135\|knap2_maldo : 255.0) Homeobox protein...	0.02	Orthogroups_2024-Update
Solyc05g005090	No alias	Knotted-1 homeobox protein (AHRD V3.3 *** R9R650_9FABA)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004451	isocitrate lyase activity	IEP	Predicted GO
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Predicted GO
MF	GO:0016833	oxo-acid-lyase activity	IEP	Predicted GO
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	Predicted GO
CC	GO:0030127	COPII vesicle coat	IEP	Predicted GO
MF	GO:0030570	pectate lyase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005539	ELK_dom	18	39
IPR008422	Homeobox_KN_domain	58	97

External Links

No external refs found!

LOC_Os03g47016

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation