1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g47800

LOC_Os03g47800


Description : RNA recognition motif containing protein, expressed


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g47800
Cluster HCCA clusters: cluster_0107

Target Alias Description ECC score Gene Family Method Actions
At1g73530 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.02 Orthogroups_2024-Update
Cre17.g729150 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.01 Orthogroups_2024-Update
LOC_Os04g33810 No alias RNA recognition motif containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Seita.3G401500.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004325 ferrochelatase activity IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006783 heme biosynthetic process IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 115 131
IPR000504 RRM_dom 9 78
No external refs found!