LOC_Os03g47830


Description : argonaute, putative, expressed


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g47830
Cluster HCCA clusters: cluster_0145

Target Alias Description ECC score Gene Family Method Actions
AC199001.3_FG005 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 Orthogroups_2024-Update
AC217043.3_FG007 No alias Argonaute family protein 0.02 Orthogroups_2024-Update
Brara.C01682.1 No alias siRNA-integrating factor *(AGO) 0.02 Orthogroups_2024-Update
Brara.J01530.1 No alias siRNA-integrating factor *(AGO) 0.02 Orthogroups_2024-Update
Glyma.12G083500 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G031130.2 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os02g40320 No alias PINHEAD, putative, expressed 0.02 Orthogroups_2024-Update
Seita.2G310800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.7G201100.1 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 Orthogroups_2024-Update
Sopen02g018440 No alias Piwi domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
InterPro domains Description Start Stop
IPR032474 Argonaute_N 138 259
IPR003165 Piwi 542 847
IPR003100 PAZ_dom 310 379
IPR032472 ArgoL2 388 434
IPR032473 Argonaute_Mid_dom 445 523
No external refs found!