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  5. Solyc07g054080

Solyc07g054080


Description : RING/U-box superfamily protein (AHRD V3.3 *-* AT1G19310.1)


Gene families : OG_42_0000548 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000548_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g054080
Cluster HCCA clusters: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
Bradi4g00760 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.C02146.1 No alias E3 ubiquitin ligase *(RMA/MUSE) 0.04 Orthogroups_2024-Update
HORVU2Hr1G091220.1 No alias E3 ubiquitin ligase *(RMA/MUSE) 0.03 Orthogroups_2024-Update
HORVU5Hr1G011730.2 No alias E3 ubiquitin ligase *(RMA/MUSE) 0.04 Orthogroups_2024-Update
Solyc10g006960 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT3G58030.4) 0.03 Orthogroups_2024-Update
Sopen07g028020 No alias Zinc finger, C3HC4 type (RING finger) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0016289 CoA hydrolase activity IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 37 85
No external refs found!