1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g49170

LOC_Os03g49170


Description : zinc finger family protein, putative, expressed


Gene families : OG_42_0002653 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002653_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g49170
Cluster HCCA clusters: cluster_0113

Target Alias Description ECC score Gene Family Method Actions
GRMZM5G845366 No alias CCCH-type zinc finger protein with ARM repeat domain 0.02 Orthogroups_2024-Update
Glyma.09G102900 No alias CCCH-type zinc finger protein with ARM repeat domain 0.03 Orthogroups_2024-Update
Glyma.13G202800 No alias CCCH-type zinc finger protein with ARM repeat domain 0.04 Orthogroups_2024-Update
Glyma.19G141700 No alias CCCH-type zinc finger protein with ARM repeat domain 0.02 Orthogroups_2024-Update
MA_329868g0010 No alias (at2g41900 : 509.0) CCCH-type zinc finger protein with... 0.03 Orthogroups_2024-Update
PSME_00029577-RA No alias (at2g41900 : 598.0) CCCH-type zinc finger protein with... 0.03 Orthogroups_2024-Update
PSME_00052684-RA No alias (at2g41900 : 523.0) CCCH-type zinc finger protein with... 0.03 Orthogroups_2024-Update
Potri.001G258400 No alias CCCH-type zinc finger protein with ARM repeat domain 0.02 Orthogroups_2024-Update
Potri.009G061000 No alias CCCH-type zinc finger protein with ARM repeat domain 0.03 Orthogroups_2024-Update
Solyc03g063680 No alias Zinc finger transcription factor 26 0.02 Orthogroups_2024-Update
Solyc10g079120 No alias Zinc finger transcription factor 60 0.04 Orthogroups_2024-Update
Sopen10g030850 No alias Zinc finger C-x8-C-x5-C-x3-H type (and similar) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0004061 arylformamidase activity IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006569 tryptophan catabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
BP GO:0009063 cellular amino acid catabolic process IEP Predicted GO
BP GO:0009074 aromatic amino acid family catabolic process IEP Predicted GO
BP GO:0009310 amine catabolic process IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
BP GO:0019441 tryptophan catabolic process to kynurenine IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
CC GO:0030896 checkpoint clamp complex IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
BP GO:0042180 cellular ketone metabolic process IEP Predicted GO
BP GO:0042402 cellular biogenic amine catabolic process IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
BP GO:0042436 indole-containing compound catabolic process IEP Predicted GO
BP GO:0042537 benzene-containing compound metabolic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0046218 indolalkylamine catabolic process IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0070189 kynurenine metabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
BP GO:1901606 alpha-amino acid catabolic process IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 326 346
IPR020683 Ankyrin_rpt-contain_dom 108 177
No external refs found!