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  5. LOC_Os03g49580

LOC_Os03g49580


Description : eukaryotic peptide chain release factor subunit 1-1, putative, expressed


Gene families : OG_42_0001654 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001654_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g49580
Cluster HCCA clusters: cluster_0033

Target Alias Description ECC score Gene Family Method Actions
Bradi2g27180 No alias eukaryotic release factor 1-2 0.02 Orthogroups_2024-Update
Cre13.g587050 No alias eukaryotic release factor 1-3 0.01 Orthogroups_2024-Update
Pp1s90_78V6 No alias eukaryotic peptide chain release factor subunit 1-1 0.02 Orthogroups_2024-Update
Seita.2G372700.1 No alias translation termination factor *(eRF1) 0.03 Orthogroups_2024-Update
Sopen12g005530 No alias eRF1 domain 2 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005102 signaling receptor binding IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
MF GO:0008373 sialyltransferase activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005141 eRF1_2 144 277
IPR005142 eRF1_3 281 418
IPR005140 eRF1_1_Pelota 17 138
No external refs found!