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  5. LOC_Os03g51200

LOC_Os03g51200


Description : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g51200
Cluster HCCA clusters: cluster_0059

Target Alias Description ECC score Gene Family Method Actions
Bradi4g06010 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G041381 No alias histone H2A 2 0.03 Orthogroups_2024-Update
GRMZM2G151826 No alias histone H2A 2 0.03 Orthogroups_2024-Update
Glyma.13G333900 No alias histone H2A 12 0.02 Orthogroups_2024-Update
HORVU3Hr1G116550.5 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU5Hr1G105090.1 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
LOC_Os05g38640 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os12g25120 No alias core histone H2A/H2B/H3/H4, putative, expressed 0.03 Orthogroups_2024-Update
MA_7320190g0010 No alias (p19177|h2a_petcr : 149.0) Histone H2A - Petroselinum... 0.03 Orthogroups_2024-Update
PSME_00017670-RA No alias (p35063|h2ax_picab : 188.0) Histone H2AX - Picea abies... 0.01 Orthogroups_2024-Update
Seita.3G347600.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Sobic.002G059200.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sopen01g042970 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Predicted GO
CC GO:0000445 THO complex part of transcription export complex IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 14 92
IPR032454 Histone_H2A_C 95 127
No external refs found!