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  5. LOC_Os03g52640

LOC_Os03g52640


Description : expressed protein


Gene families : OG_42_0005838 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005838_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g52640
Cluster HCCA clusters: cluster_0086

Target Alias Description ECC score Gene Family Method Actions
A4A49_16798 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Bradi1g09450 No alias methyltransferases 0.05 Orthogroups_2024-Update
Sobic.001G099000.1 No alias RsmD-type rRNA methyltransferase 0.03 Orthogroups_2024-Update
Solyc02g067540 No alias methyltransferase (AHRD V3.3 *** AT3G28460.1),Pfam:PF03602 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006189 'de novo' IMP biosynthetic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!