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  5. LOC_Os03g56850

LOC_Os03g56850


Description : pentatricopeptide, putative, expressed


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g56850
Cluster HCCA clusters: cluster_0118

Target Alias Description ECC score Gene Family Method Actions
HORVU1Hr1G073180.8 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G012210.2 No alias Unknown function 0.02 Orthogroups_2024-Update
MA_10164206g0010 No alias (at1g11290 : 670.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
Potri.010G168800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Seita.3G069000.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.5G028800.1 No alias RNA editing factor *(PGN) 0.01 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.003G142400.2 No alias RNA editing factor *(PGN) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 513 561
IPR002885 Pentatricopeptide_repeat 211 250
IPR002885 Pentatricopeptide_repeat 614 662
IPR002885 Pentatricopeptide_repeat 312 358
IPR002885 Pentatricopeptide_repeat 418 445
IPR002885 Pentatricopeptide_repeat 692 713
No external refs found!