LOC_Os03g58060


Description : XRN 5'-3' exonuclease N-terminus domain containing protein, expressed


Gene families : OG_42_0000619 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000619_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g58060
Cluster HCCA clusters: cluster_0107

Target Alias Description ECC score Gene Family Method Actions
A4A49_07030 No alias 5'-3' exoribonuclease 3 0.02 Orthogroups_2024-Update
MA_10430844g0010 No alias (at1g75660 : 1107.0) Encodes a protein with similarity... 0.04 Orthogroups_2024-Update
PSME_00003771-RA No alias (at1g75660 : 288.0) Encodes a protein with similarity to... 0.02 Orthogroups_2024-Update
Sobic.001G058700.1 No alias exoribonuclease *(XRN4) 0.02 Orthogroups_2024-Update
Sopen04g018450 No alias XRN 5'-3' exonuclease N-terminus 0.03 Orthogroups_2024-Update
evm.model.contig_4415.6 No alias (at1g75660 : 446.0) Encodes a protein with similarity to... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004527 exonuclease activity IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 264 278
IPR004859 Put_53exo 1 254
No external refs found!