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  5. LOC_Os03g58470

LOC_Os03g58470


Description : retrotransposon protein, putative, Ty3-gypsy subclass, expressed


Gene families : OG_42_0000689 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000689_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g58470
Cluster HCCA clusters: cluster_0116

Target Alias Description ECC score Gene Family Method Actions
Brara.D01833.1 No alias linker histone *(H1) 0.02 Orthogroups_2024-Update
GRMZM2G121221 No alias winged-helix DNA-binding transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.10G033100 No alias winged-helix DNA-binding transcription factor family protein 0.03 Orthogroups_2024-Update
MA_196776g0010 No alias (original description: no original description) 0.03 Orthogroups_2024-Update
MA_500183g0010 No alias (original description: no original description) 0.04 Orthogroups_2024-Update
MA_5243726g0010 No alias (p27806|h1_wheat : 91.3) Histone H1 - Triticum aestivum... 0.02 Orthogroups_2024-Update
MA_6409g0010 No alias (original description: no original description) 0.05 Orthogroups_2024-Update
MA_9984190g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Mp6g03150.1 No alias linker histone (H1) 0.02 Orthogroups_2024-Update
Pp1s27_179V6 No alias histone-like protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006334 nucleosome assembly IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
BP GO:0015689 molybdate ion transport IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 54 121
No external refs found!