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  5. LOC_Os03g60400

LOC_Os03g60400


Description : 40S ribosomal protein S23, putative, expressed


Gene families : OG_42_0001537 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001537_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g60400
Cluster HCCA clusters: cluster_0075

Target Alias Description ECC score Gene Family Method Actions
145246 No alias Ribosomal protein S12/S23 family protein 0.03 Orthogroups_2024-Update
A4A49_59751 No alias 40s ribosomal protein s23 0.04 Orthogroups_2024-Update
Bradi2g22897 No alias Ribosomal protein S12/S23 family protein 0.03 Orthogroups_2024-Update
Brara.B00072.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.J02847.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Cre12.g504200 No alias Ribosomal protein S12/S23 family protein 0.02 Orthogroups_2024-Update
Glyma.10G049400 No alias Ribosomal protein S12/S23 family protein 0.03 Orthogroups_2024-Update
Glyma.19G178800 No alias Ribosomal protein S12/S23 family protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G071570.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
HORVU3Hr1G087380.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
HORVU5Hr1G066080.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Pp1s135_33V6 No alias 40s ribosomal protein s23 0.03 Orthogroups_2024-Update
Pp1s264_73V6 No alias 40s ribosomal protein s23 0.03 Orthogroups_2024-Update
Pp1s287_20V6 No alias 40s ribosomal protein s23 0.05 Orthogroups_2024-Update
Pp1s61_268V6 No alias 40s ribosomal protein s23 0.05 Orthogroups_2024-Update
Sobic.003G346600.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Sobic.009G166500.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Solyc09g007350 No alias Ribosomal protein S12 (AHRD V3.3 *** A0A059LPB2_9CHLO) 0.03 Orthogroups_2024-Update
Solyc10g084310 No alias Ribosomal protein S12 (AHRD V3.3 *** A0A059LPB2_9CHLO) 0.03 Orthogroups_2024-Update
Solyc10g086020 No alias interactor of constitutive active ROPs 3 0.03 Orthogroups_2024-Update
Sopen09g002250 No alias Ribosomal protein S12/S23 0.03 Orthogroups_2024-Update
Sopen10g035390 No alias Ribosomal protein S12/S23 0.04 Orthogroups_2024-Update
evm.model.contig_4434.4 No alias (p46297|rs23_fraan : 218.0) 40S ribosomal protein S23... 0.05 Orthogroups_2024-Update
evm.model.tig00001264.27 No alias (at5g02960 : 160.0) Ribosomal protein S12/S23 family... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Predicted GO
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
CC GO:0030915 Smc5-Smc6 complex IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0106068 SUMO ligase complex IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 31 141
No external refs found!