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Description : homeodomain GLABROUS 7 (AHRD V3.3 --* AT5G52170.3)
Gene families : OG_42_0001107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001107_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc07g055230 | |
| Cluster | HCCA clusters: Cluster_55 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 444767 | No alias | ribosomal protein L16B | 0.02 | Orthogroups_2024-Update | |
| A4A49_37402 | No alias | 60s ribosomal protein l11-2 | 0.13 | Orthogroups_2024-Update | |
| A4A49_58122 | No alias | 60s ribosomal protein l11-2 | 0.08 | Orthogroups_2024-Update | |
| A4A49_61288 | No alias | 60s ribosomal protein l11-2 | 0.05 | Orthogroups_2024-Update | |
| At2g42740 | No alias | 60S ribosomal protein L11-1... | 0.03 | Orthogroups_2024-Update | |
| At3g58700 | No alias | 60S ribosomal protein L11-2... | 0.07 | Orthogroups_2024-Update | |
| At4g18730 | No alias | 60S ribosomal protein L11-2... | 0.04 | Orthogroups_2024-Update | |
| Bradi2g06467 | No alias | ribosomal protein large subunit 16A | 0.15 | Orthogroups_2024-Update | |
| Bradi2g32640 | No alias | ribosomal protein large subunit 16A | 0.13 | Orthogroups_2024-Update | |
| Bradi3g09030 | No alias | ribosomal protein large subunit 16A | 0.13 | Orthogroups_2024-Update | |
| Brara.A00981.1 | No alias | component *(uL5) of large ribosomal-subunit (LSU) proteome | 0.12 | Orthogroups_2024-Update | |
| Brara.B02847.1 | No alias | component *(uL5) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
| Brara.D00226.1 | No alias | component *(uL5) of large ribosomal-subunit (LSU) proteome | 0.1 | Orthogroups_2024-Update | |
| Brara.F03663.1 | No alias | component *(uL5) of large ribosomal-subunit (LSU) proteome | 0.14 | Orthogroups_2024-Update | |
| Brara.I01908.1 | No alias | component *(uL5) of large ribosomal-subunit (LSU) proteome | 0.1 | Orthogroups_2024-Update | |
| Brara.I04045.1 | No alias | component *(uL5) of large ribosomal-subunit (LSU) proteome | 0.02 | Orthogroups_2024-Update | |
| Brara.K00428.1 | No alias | component *(uL5) of large ribosomal-subunit (LSU) proteome | 0.2 | Orthogroups_2024-Update | |
| Cre01.g027000 | No alias | ribosomal protein large subunit 16A | 0.16 | Orthogroups_2024-Update | |
| GRMZM2G001816 | No alias | Ribosomal L5P family protein | 0.07 | Orthogroups_2024-Update | |
| GRMZM2G014444 | No alias | Ribosomal L5P family protein | 0.05 | Orthogroups_2024-Update | |
| Glyma.06G272500 | No alias | Ribosomal L5P family protein | 0.07 | Orthogroups_2024-Update | |
| Glyma.06G317400 | No alias | Ribosomal L5P family protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.06G323000 | No alias | Ribosomal L5P family protein | 0.19 | Orthogroups_2024-Update | |
| Glyma.12G131700 | No alias | Ribosomal L5P family protein | 0.08 | Orthogroups_2024-Update | |
| Glyma.15G227600 | No alias | Ribosomal L5P family protein | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G028820.1 | No alias | component *(uL5) of large ribosomal-subunit (LSU) proteome | 0.13 | Orthogroups_2024-Update | |
| HORVU3Hr1G026060.1 | No alias | component *(uL5) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Kfl00764_0020 | kfl00764_0020_v1.... | (p46287|rl11_medsa : 322.0) 60S ribosomal protein L11... | 0.03 | Orthogroups_2024-Update | |
| LOC_Os01g10820 | No alias | ribosomal protein L5, putative, expressed | 0.07 | Orthogroups_2024-Update | |
| LOC_Os02g14059 | No alias | ribosomal protein L5, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| MA_74060g0010 | No alias | (at5g45775 : 344.0) Ribosomal L5P family protein;... | 0.06 | Orthogroups_2024-Update | |
| MA_86694g0010 | No alias | (at5g45775 : 283.0) Ribosomal L5P family protein;... | 0.06 | Orthogroups_2024-Update | |
| Mp2g24740.1 | No alias | component RPL11 of LSU proteome component | 0.17 | Orthogroups_2024-Update | |
| Mp6g18870.1 | No alias | component RPL11 of LSU proteome component | 0.07 | Orthogroups_2024-Update | |
| PSME_00002051-RA | No alias | (at5g45775 : 331.0) Ribosomal L5P family protein;... | 0.07 | Orthogroups_2024-Update | |
| Potri.006G181600 | No alias | Ribosomal L5P family protein | 0.07 | Orthogroups_2024-Update | |
| Potri.011G068900 | No alias | Ribosomal L5P family protein | 0.09 | Orthogroups_2024-Update | |
| Pp1s239_32V6 | No alias | 60s ribosomal protein | 0.09 | Orthogroups_2024-Update | |
| Pp1s265_52V6 | No alias | 60s ribosomal protein | 0.16 | Orthogroups_2024-Update | |
| Pp1s2_412V6 | No alias | 60s ribosomal protein | 0.08 | Orthogroups_2024-Update | |
| Pp1s38_269V6 | No alias | 60s ribosomal protein | 0.15 | Orthogroups_2024-Update | |
| Pp1s41_304V6 | No alias | 60s ribosomal protein | 0.18 | Orthogroups_2024-Update | |
| Pp1s54_157V6 | No alias | 60s ribosomal protein | 0.12 | Orthogroups_2024-Update | |
| Seita.5G144900.1 | No alias | component *(uL5) of large ribosomal-subunit (LSU) proteome | 0.22 | Orthogroups_2024-Update | |
| Seita.7G232800.1 | No alias | component *(uL5) of large ribosomal-subunit (LSU) proteome | 0.15 | Orthogroups_2024-Update | |
| Sobic.003G025200.2 | No alias | component *(uL5) of large ribosomal-subunit (LSU) proteome | 0.28 | Orthogroups_2024-Update | |
| Sobic.004G103800.1 | No alias | component *(uL5) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G104100.1 | No alias | component *(uL5) of large ribosomal-subunit (LSU) proteome | 0.14 | Orthogroups_2024-Update | |
| Sobic.004G104300.1 | No alias | component *(uL5) of large ribosomal-subunit (LSU) proteome | 0.17 | Orthogroups_2024-Update | |
| Sopen02g030920 | No alias | ribosomal L5P family C-terminus | 0.15 | Orthogroups_2024-Update | |
| Sopen07g026990 | No alias | ribosomal L5P family C-terminus | 0.15 | Orthogroups_2024-Update | |
| Sopen10g003850 | No alias | ribosomal L5P family C-terminus | 0.27 | Orthogroups_2024-Update | |
| Sopen12g006290 | No alias | ribosomal L5P family C-terminus | 0.25 | Orthogroups_2024-Update | |
| evm.model.contig_4456.22 | No alias | (p46287|rl11_medsa : 230.0) 60S ribosomal protein L11... | 0.27 | Orthogroups_2024-Update | |
| evm.model.tig00020610.38 | No alias | (at2g42740 : 221.0) encodes a cytosolic ribosomal... | 0.13 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005622 | intracellular | IEP | Predicted GO |
| CC | GO:0005741 | mitochondrial outer membrane | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006414 | translational elongation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| MF | GO:0008097 | 5S rRNA binding | IEP | Predicted GO |
| BP | GO:0008150 | biological_process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| CC | GO:0019867 | outer membrane | IEP | Predicted GO |
| CC | GO:0030684 | preribosome | IEP | Predicted GO |
| CC | GO:0031968 | organelle outer membrane | IEP | Predicted GO |
| CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| CC | GO:0098805 | whole membrane | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |