1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g61190

LOC_Os03g61190


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g61190
Cluster HCCA clusters: cluster_0118

Target Alias Description ECC score Gene Family Method Actions
LOC_Os06g19350 No alias retrotransposon, putative, centromere-specific, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g34230 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g20040 No alias retrotransposon, putative, centromere-specific, expressed 0.04 Orthogroups_2024-Update
Potri.001G260400 No alias Function unknown 0.02 Orthogroups_2024-Update
Sopen04g010080 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen07g016540 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen11g009630 No alias Integrase core domain 0.02 Orthogroups_2024-Update
evm.model.contig_3474.1 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 179 272
IPR000477 RT_dom 659 782
No external refs found!