1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g055330

Solyc07g055330


Description : RING/U-box superfamily protein, putative (AHRD V3.3 *** A0A061ECA4_THECC)


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g055330
Cluster HCCA clusters: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Bradi4g31645 No alias RING-H2 finger C1A 0.03 Orthogroups_2024-Update
LOC_Os09g27380 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_170709g0010 No alias (at5g01980 : 161.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
Mp7g15970.1 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 186 228
No external refs found!