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  5. Solyc07g056290

Solyc07g056290


Description : Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G78400.1)


Gene families : OG_42_0000512 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000512_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g056290
Cluster HCCA clusters: Cluster_302

Target Alias Description ECC score Gene Family Method Actions
A4A49_25931 No alias polygalacturonase 0.02 Orthogroups_2024-Update
At3g07830 No alias Pectin lyase-like superfamily protein... 0.03 Orthogroups_2024-Update
At4g18180 No alias Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT4G18180] 0.02 Orthogroups_2024-Update
Bradi1g36090 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g36110 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.C02225.1 No alias pectin lyase & EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Brara.D02006.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Potri.001G377700 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.007G035800 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Solyc07g044870 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G07820.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008252 nucleotidase activity IEP Predicted GO
MF GO:0008253 5'-nucleotidase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009264 deoxyribonucleotide catabolic process IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 62 387
No external refs found!