LOC_Os04g23360

Description : retrotransposon protein, putative, unclassified, expressed

Gene families : OG_42_0000057 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os04g23360
Cluster	HCCA clusters: cluster_0133

Target	Alias	Description	ECC score	Gene Family Method
Brara.I04085.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Glyma.01G135100	No alias	PIF1 helicase	0.03	Orthogroups_2024-Update
Glyma.04G116000	No alias	PIF1 helicase	0.02	Orthogroups_2024-Update
Glyma.05G078600	No alias	Function unknown	0.02	Orthogroups_2024-Update
Glyma.09G061100	No alias	PIF1 helicase	0.02	Orthogroups_2024-Update
Glyma.09G080200	No alias	PIF1 helicase	0.03	Orthogroups_2024-Update
Glyma.12G111300	No alias	PIF1 helicase	0.03	Orthogroups_2024-Update
Glyma.16G109000	No alias	PIF1 helicase	0.03	Orthogroups_2024-Update
Glyma.20G059700	No alias	Function unknown	0.03	Orthogroups_2024-Update
LOC_Os01g44200	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
LOC_Os05g23690	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
LOC_Os11g28650	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
Potri.008G167100	No alias	PIF1 helicase	0.03	Orthogroups_2024-Update
Seita.1G149400.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.2G161100.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Seita.4G159100.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Seita.9G083700.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Solyc07g032810	No alias	LOW QUALITY:Helicase-like protein (AHRD V3.3 - Q9AYF0_ORYSJ)	0.03	Orthogroups_2024-Update
Sopen09g023800	No alias	PIF1-like helicase	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060249	anatomical structure homeostasis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	Predicted GO
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Predicted GO
CC	GO:0005680	anaphase-promoting complex	IEP	Predicted GO
BP	GO:0007088	regulation of mitotic nuclear division	IEP	Predicted GO
BP	GO:0007346	regulation of mitotic cell cycle	IEP	Predicted GO
BP	GO:0010564	regulation of cell cycle process	IEP	Predicted GO
BP	GO:0010965	regulation of mitotic sister chromatid separation	IEP	Predicted GO
BP	GO:0030071	regulation of mitotic metaphase/anaphase transition	IEP	Predicted GO
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Predicted GO
BP	GO:0033043	regulation of organelle organization	IEP	Predicted GO
BP	GO:0033044	regulation of chromosome organization	IEP	Predicted GO
BP	GO:0033045	regulation of sister chromatid segregation	IEP	Predicted GO
BP	GO:0033047	regulation of mitotic sister chromatid segregation	IEP	Predicted GO
BP	GO:0051128	regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051726	regulation of cell cycle	IEP	Predicted GO
BP	GO:0051783	regulation of nuclear division	IEP	Predicted GO
BP	GO:0051983	regulation of chromosome segregation	IEP	Predicted GO
BP	GO:0090231	regulation of spindle checkpoint	IEP	Predicted GO
BP	GO:0090266	regulation of mitotic cell cycle spindle assembly checkpoint	IEP	Predicted GO
BP	GO:1901976	regulation of cell cycle checkpoint	IEP	Predicted GO
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Predicted GO
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	Predicted GO
BP	GO:1902099	regulation of metaphase/anaphase transition of cell cycle	IEP	Predicted GO
BP	GO:1903504	regulation of mitotic spindle checkpoint	IEP	Predicted GO
BP	GO:1905818	regulation of chromosome separation	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR025476	Helitron_helicase-like	512	695
IPR010285	DNA_helicase_pif1-like	931	1300

External Links

No external refs found!

LOC_Os04g23360

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation