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  5. Solyc07g062980

Solyc07g062980


Description : Squamosa promoter-binding protein, putative (AHRD V3.3 *** B9T4B7_RICCO)


Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g062980
Cluster HCCA clusters: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
Brara.C01519.1 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.13G274900 No alias squamosa promoter-binding protein-like 12 0.03 Orthogroups_2024-Update
LOC_Os02g07780 No alias OsSPL4 - SBP-box gene family member, expressed 0.03 Orthogroups_2024-Update
Potri.003G169400 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.02 Orthogroups_2024-Update
Seita.2G324900.1 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
Solyc04g045560 No alias Squamosa promoter-binding protein 3 0.04 Orthogroups_2024-Update
Sopen05g011450 No alias SBP domain 0.03 Orthogroups_2024-Update
Sopen12g018830 No alias SBP domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004333 SBP_dom 19 92
No external refs found!