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  5. LOC_Os04g28180

LOC_Os04g28180


Description : ribosomal protein, putative, expressed


Gene families : OG_42_0001226 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001226_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g28180
Cluster HCCA clusters: cluster_0120

Target Alias Description ECC score Gene Family Method Actions
A4A49_62566 No alias 40s ribosomal protein s8 0.03 Orthogroups_2024-Update
Bradi3g43560 No alias Ribosomal protein S8e family protein 0.03 Orthogroups_2024-Update
Brara.C00929.1 No alias component *(eS8) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.J01583.1 No alias component *(eS8) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Cre06.g272800 No alias Ribosomal protein S8e family protein 0.04 Orthogroups_2024-Update
GRMZM2G030228 No alias Ribosomal protein S8e family protein 0.03 Orthogroups_2024-Update
Glyma.03G086400 No alias Ribosomal protein S8e family protein 0.04 Orthogroups_2024-Update
Glyma.16G087700 No alias Ribosomal protein S8e family protein 0.03 Orthogroups_2024-Update
Kfl00279_0040 kfl00279_0040_v1.1 (p49199|rs8_orysa : 268.0) 40S ribosomal protein S8 -... 0.02 Orthogroups_2024-Update
Mp2g16300.1 No alias component RPS8 of SSU proteome 0.02 Orthogroups_2024-Update
PSME_00001605-RA No alias (q08069|rs8_maize : 279.0) 40S ribosomal protein S8 -... 0.02 Orthogroups_2024-Update
Potri.009G056900 No alias Ribosomal protein S8e family protein 0.02 Orthogroups_2024-Update
Pp1s223_73V6 No alias 40s ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s227_85V6 No alias 40s ribosomal protein 0.02 Orthogroups_2024-Update
Pp1s292_14V6 No alias 40s ribosomal protein 0.04 Orthogroups_2024-Update
Pp1s46_183V6 No alias 40s ribosomal protein 0.03 Orthogroups_2024-Update
Seita.1G314000.1 No alias component *(eS8) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Seita.7G057900.1 No alias component *(eS8) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.004G244800.1 No alias component *(eS8) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Solyc06g007570 No alias 40S ribosomal protein S8 (AHRD V3.3 *** K4C3D8_SOLLC) 0.04 Orthogroups_2024-Update
Solyc06g083180 No alias 40S ribosomal protein S8 (AHRD V3.3 *** K4CAH3_SOLLC) 0.05 Orthogroups_2024-Update
Solyc07g065170 No alias 40S ribosomal protein S8 (AHRD V3.3 *** K4CHJ6_SOLLC) 0.03 Orthogroups_2024-Update
Sopen06g002470 No alias Ribosomal protein S8e 0.04 Orthogroups_2024-Update
Sopen06g034570 No alias Ribosomal protein S8e 0.02 Orthogroups_2024-Update
Sopen07g033390 No alias Ribosomal protein S8e 0.05 Orthogroups_2024-Update
Sopen09g021090 No alias Ribosomal protein S8e 0.02 Orthogroups_2024-Update
Sopen10g002020 No alias Ribosomal protein S8e 0.04 Orthogroups_2024-Update
evm.model.contig_4462.6 No alias (q08069|rs8_maize : 255.0) 40S ribosomal protein S8 -... 0.04 Orthogroups_2024-Update
evm.model.tig00020610.79 No alias (p49199|rs8_orysa : 269.0) 40S ribosomal protein S8 -... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 1 199
No external refs found!