LOC_Os04g28820

Description : retrotransposon protein, putative, unclassified, expressed

Gene families : OG_42_0000057 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os04g28820
Cluster	HCCA clusters: cluster_0097

Target	Alias	Description	ECC score	Gene Family Method
A4A49_57387	No alias	hypothetical protein	0.02	Orthogroups_2024-Update
Brara.A01906.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Brara.B02803.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Brara.D00782.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Glyma.04G116000	No alias	PIF1 helicase	0.03	Orthogroups_2024-Update
Glyma.19G051300	No alias	PIF1 helicase	0.02	Orthogroups_2024-Update
Seita.1G149400.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.9G083700.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Solyc02g037640	No alias	LOW QUALITY:DNA helicase homolog, putative (AHRD V3.3...	0.02	Orthogroups_2024-Update
Solyc10g074420	No alias	LOW QUALITY:AT hook motif-containing protein, putative...	0.02	Orthogroups_2024-Update
Solyc12g017560	No alias	LOW QUALITY:AT hook motif-containing protein, putative...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060249	anatomical structure homeostasis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005875	microtubule associated complex	IEP	Predicted GO
CC	GO:0030286	dynein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR010285	DNA_helicase_pif1-like	1402	1745
IPR025476	Helitron_helicase-like	774	955

External Links

No external refs found!

LOC_Os04g28820

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation